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raw optical mapping molecule files  (BioNano Genomics)

 
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    BioNano Genomics raw optical mapping molecule files
    Raw Optical Mapping Molecule Files, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/raw+optical+mapping+molecule+files/single+molecule+optical+mapping/pm37612510-584-20-43
    Average 90 stars, based on 1 article reviews
    raw optical mapping molecule files - by Bioz Stars, 2026-09
    90/100 stars

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    Article Title: Assembly of 43 human Y chromosomes reveals extensive complexity and variation.
    Article Snippet: To evaluate the accuracy of Verkko assemblies, all samples (n = 43) were first de novo assembled using the raw optical mapping molecule files (bnx), followed by alignment of assembled contigs to the T2T whole-genome reference genome assembly (CHM13 + T2T Y) using Bionano Solve (v.3.5.1) pipelineCL.py. python2.7 Solve3.5.1_01142020/Pipeline/1.0/pipelineCL.py -T 64 -U -j 64 -jp 64 -N 6 -f 0.25 -i 5 -w -c 3 -y -b ${ bnx} -l ${output_dir} -t Solve3.5.1_01142020/RefAligner/1.0/ -a Solve3.5.1_01142020/RefAligner/1.0/optArguments_haplotype_DLE1_ saphyr_human.xml -r ${ref} To improve the accuracy of optical mapping Y chromosomal assemblies, unaligned molecules, molecules that align to T2T chromosome Y and molecules that were used for assembling contigs but did not align to any chromosomes were extracted from the optical mapping de novo assembly results.



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    BioNano Genomics raw optical mapping molecule files
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    raw optical mapping molecule files bnx  (BioNano Genomics)
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